Note that this help page is under construction. Instead of a comprehensive user guide, which nobody reads..., we intend to respond here quickly to questions and feedback which we get from users. So, if anything is missing here, please send us a note!
This tutorial explains how to define reactions properly, so that they can be processed with the CoLibri tools. The basis of the description is the KNIME® environment, but you may easily extrapolate from there to command line use:
As a novice we recommend you to obtain KNIME® and install our amazing workflow BioSphere. This KNIME® workflow contains and exemplifies the use of all CoLibri components.
As usual use --help to get a list of all command line options.