knowledge base - FlexX http://www.biosolveit.de/faq en-us http://www.biosolveit.de/faq ActiveKB NX support@biosolveit.de Fri, 10 Sep 2010 10:57:20 CEST 20 FlexX/FTrees for Windows: I use cygwin, and the tools don't start up. http://www.biosolveit.de/faq/questions/72/ Under cygwin, please perform a change of permissions on both the dll files and the executables. chmod +rx *dll and chmod +rw FTrees.exe Marcus Gastreich Thu, 18 Jan 2007 12:41:55 CET Are FlexX Units kJ/mol or kcal/mol http://www.biosolveit.de/faq/questions/73/ FlexX uses the units the Boehm LUDI paper works with; these are kJ/mol.However, for example, the max. achievable value of 4.7 kJ/mol per hydrogen bond is not the absolute value of the hydrogen bon ... Marcus Gastreich Wed, 21 Feb 2007 18:46:31 CET FlexX/SIS Parallel Runs Utter A PVM Error: "-7 (No such file)" http://www.biosolveit.de/faq/questions/76/ When FlexX or FlexSIS utter this error libpvm [nnnn]: pvm_spawn: Not FoundTrouble spawning work processes on host NNN, abort. Error codes:Process 0 : -7 (No such file)this points to the PVM not be ... Marcus Gastreich Wed, 17 Oct 2007 17:08:59 CEST What is the difference between CORINA and CORINA_F? http://www.biosolveit.de/faq/questions/77/ CORINA_F and CORINA are two different tools both developed by Molecular Networks GmbH. All functionality covered by CORINA-F is also in CORINA . For FlexX/SIS docking, CORINA_F is sufficient as ... Marcus Gastreich Tue, 20 Nov 2007 19:24:39 CET How to run FlexX on Windows Vista (compatibility)... http://www.biosolveit.de/faq/questions/78/ FlexX/SIS pre-3.1.2 versions can be made to run under Windows Vista.You need to enable the executable to run in XP compatibilitiy mode.To do so:. please do a right-click on the executable's icon ... Marcus Gastreich Tue, 20 Jan 2009 20:13:23 CET FlexX 3 and later: libraries missing (Xmu, glx, ...) http://www.biosolveit.de/faq/questions/80/ If you encounter a quick startup and immediate end of a flashing black box upon starting FlexX/FlexSIS, then please do the following: Issue the commandstrace -o flexx_trace.out ./flexx from the ... Marcus Gastreich Tue, 20 Jan 2009 20:12:01 CET Windows Vista: Sometimes, the program crashes without any warnings. http://www.biosolveit.de/faq/questions/84/ ReCore and FlexX/-SIS in GUI modes (Release 3.1 and newer) may crash with some input molecules. All of the problems like this could be resolved so far by updating graphics card drivers. Vista pr ... Marcus Gastreich Mon, 05 Jan 2009 13:03:11 CET Howto: Large Scale Virtual Screening with FlexX or FlexSIS (Howto). http://www.biosolveit.de/faq/questions/85/ Large Scale Screening with FlexX/-SIS   This applies to FlexX and FlexSIS Release 3 and newer.There are three stages we will explain below.   Part 1: Receptor Preparation Part 2: Screening ... Marcus Gastreich Sun, 29 Mar 2009 14:58:37 CEST I can't get MOE to run with LeadIT's Docking http://www.biosolveit.de/faq/questions/94/ Applies to all LeadIT versions (not FlexX-GUIs!), and all MOE versions with a FlexX/-SIS interface:To make LeadIT work with MOE, please use the two patch files attached below.Simply copy them to ... Marcus Gastreich Fri, 16 Apr 2010 18:45:59 CEST